novicida isolated from a human in Arizona. BMC Res Note 2009, 2:223.CrossRef 62. Rohmer L, Brittnacher M, Svensson

K, Buckley D, Haugen E, Zhou Y, Chang J, Levy R, Hayden H, Forsman M, Olson M, Johansson A, Kaul R, Miller SI: Potential source of Francisella tularensis live vaccine strain attenuation determined by genome comparison. Infect Immun 2006, 74:6895–6906.PubMedCrossRef 63. Ottem KF, Nylund A, Karlsbakk E, Friis-Møller A, Krossøy B: Characterization of Francisella sp., GM2212, the first Francisella isolate from marine fish, Atlantic cod (Gadus morhua). Arch Microbiol 2007, 187:343–350.PubMedCrossRef 64. Ottem KF, Nylund A, Karlsbakk E, Friis-Møller A, Kamaishi T: Elevation of Francisella philomiragia subsp. noatunensis Mikalsen et al. (2007) to Francisella

noatunensis comb. nov. [syn. Francisella piscicida Ottem et al. (2008) syn. nov.] and characterization Rabusertib in vitro of Francisella noatunensis subsp. orientalis subsp. nov. J Appl Microbiol 2009, 106:1231–1243.PubMedCrossRef 65. Johansson A, Farlow J, Dukerich M, Chambers E, Byström M, Fox J, Chu M, Forsman M, Sjöstedt A, Keim P: Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number Selleck CX-6258 tandem repeat analysis. J Bact 2004, 186:5808–5818.PubMedCrossRef 66. Murphy K, Raj T, Winters RS: White PS: me-PCR: a refined ultrafast algorithm for identifying sequence-defined genomic elements. Bioinformatics 2004, 20:588–590.PubMedCrossRef 67. Schuler GD: Sequence mapping by electronic PCR. Genome Res 1997, 7:541–550.PubMed 68. Slater GSC, Birney E: Automated generation of heuristics for biological sequence comparison. BMC Bioinf 2005, 6:31.CrossRef 69. Edgar RC: MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32:1792–1797.PubMedCrossRef 70. Walters WA, Caporaso JG, Lauber CL, Berg-Lyons D, Fierer N, Knight R: PrimerProspector: de novo design and

taxonomic analysis of barcoded polymerase chain reaction primers. Bioinformatics 2011, 27:1159–1161.PubMedCrossRef 71. Maechler M, Rousseeuw P, Struyf A, Hubert M, Hornik K: cluster: cluster analysis basics and extensions. 2012. 72. Wickham H: ggplot2: Adenosine triphosphate Eegant Graphics for Data Analysis (Use R!). New York: Springer; 2009. 73. R Development Core Team: R: a language and environment for statistical computing. 2011. 74. Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406–425.PubMed 75. Felsenstein J: Evolutionary trees from DNA Nutlin-3a manufacturer sequences: a maximum likelihood approach. J Mol Evol 1981, 17:368–376.PubMedCrossRef 76. Guindon S, Gascuel O: A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696–704.PubMedCrossRef 77.